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» Polynomial Interpretations and the Complexity of Algorithms
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BMCBI
2008
142views more  BMCBI 2008»
14 years 11 months ago
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Background: DNA microarray technology allows for the measurement of genome-wide expression patterns. Within the resultant mass of data lies the problem of analyzing and presenting...
Meng Piao Tan, Erin N. Smith, James R. Broach, Chr...
COMGEO
2010
ACM
14 years 11 months ago
Exact join detection for convex polyhedra and other numerical abstractions
r Numerical Abstractions6 Roberto Bagnaraa , Patricia M. Hillb , Enea Zaffanellaa aDepartment of Mathematics, University of Parma, Italy bSchool of Computing, University of Leeds, ...
Roberto Bagnara, Patricia M. Hill, Enea Zaffanella
BMCBI
2007
101views more  BMCBI 2007»
14 years 11 months ago
Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors
Background: The size and magnitude of the metabolome, the ratio between individual metabolites and the response of metabolic networks is controlled by multiple cellular factors. A...
Frank Kose, Jan Budczies, Matthias Holschneider, O...
FOCS
2008
IEEE
15 years 6 months ago
A Geometric Approach to Lower Bounds for Approximate Near-Neighbor Search and Partial Match
This work investigates a geometric approach to proving cell probe lower bounds for data structure problems. We consider the approximate nearest neighbor search problem on the Bool...
Rina Panigrahy, Kunal Talwar, Udi Wieder
RECOMB
2005
Springer
15 years 12 months ago
The Factor Graph Network Model for Biological Systems
Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...