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» Polynomial algebra of discrete models in systems biology
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HYBRID
2003
Springer
15 years 2 months ago
Automated Symbolic Reachability Analysis; with Application to Delta-Notch Signaling Automata
Abstract. This paper describes the implementation of predicate abstraction techniques to automatically compute symbolic backward reachable sets of high dimensional piecewise affine...
Ronojoy Ghosh, Ashish Tiwari, Claire Tomlin
ENTCS
2008
91views more  ENTCS 2008»
14 years 9 months ago
Expressing Priorities and External Probabilities in Process Algebra via Mixed Open/Closed Systems
Defining operational semantics for a process algebra is often based either on labeled transition systems that account for interaction with a context or on the so-called reduction ...
Mario Bravetti
JLP
2006
56views more  JLP 2006»
14 years 9 months ago
Linearization of hybrid processes
We present an algorithm for the linearization of hybrid processes modeled in hybrid process algebra (HyPA) and prove its correctness. HyPA is a formalism that is suitable for the ...
P. C. W. den Brand van, Michel A. Reniers, Pieter ...
TCSB
2010
14 years 8 months ago
Rule-Based Modeling of Transcriptional Attenuation at the Tryptophan Operon
Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
Céline Kuttler, Cédric Lhoussaine, M...
CIBB
2009
14 years 10 months ago
On the Use of Temporal Formal Logic to Model Gene Regulatory Networks
Modelling activities in molecular biology face the difficulty of prediction to link molecular knowledge with cell phenotypes. Even when the interaction graph between molecules is k...
Gilles Bernot, Jean-Paul Comet