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» Polynomial algebra of discrete models in systems biology
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DAGSTUHL
2006
14 years 11 months ago
Enriched categories and models for spaces of dipaths
Partially ordered sets, causets, partially ordered spaces and their local counterparts are now often used to model systems in computer science and theoretical physics. The order mo...
Timothy Porter
LSSC
2007
Springer
15 years 3 months ago
Parallel Implementation of LQG Balanced Truncation for Large-Scale Systems
Model reduction of large-scale linear time-invariant systems is an ubiquitous task in control and simulation of complex dynamical processes. We discuss how LQG balanced truncation ...
José M. Badía, Peter Benner, Rafael ...
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CMSB
2011
Springer
13 years 9 months ago
The singular power of the environment on stochastic nonlinear threshold Boolean automata networks
Abstract. This paper tackles theoretically the question of the structural stability of biological regulation networks subjected to the influence of their environment. The model of...
Jacques Demongeot, Sylvain Sené
BMCBI
2010
178views more  BMCBI 2010»
14 years 9 months ago
Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests
Background: Chow and Liu showed that the maximum likelihood tree for multivariate discrete distributions may be found using a maximum weight spanning tree algorithm, for example K...
David Edwards, Gabriel C. G. de Abreu, Rodrigo Lab...
CAINE
2007
14 years 11 months ago
Systems Modeling of Alveolar Morphogenesis In Vitro
We present a pulmonary alveolar epithelial cell model and its simulation results aimed to provide mechanistic insight into biological principles that underlie alveolar morphogenes...
Sean H. J. Kim, Sunwoo Park, Wei Yu, Keith E. Most...