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» Polynomial algebra of discrete models in systems biology
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CCE
2006
14 years 9 months ago
Computation of equilibria in models of flue gas washer plants
7 A flue gas washer is a plant for the absorption of noxious components of industrial gas output. The type of flue gas washers that is considered here is a spray tower. In the towe...
Wolfgang Desch, Karin Horn, Georg Propst
RECOMB
2002
Springer
15 years 10 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
BMCBI
2004
323views more  BMCBI 2004»
14 years 9 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
AAAI
1993
14 years 11 months ago
Scientific Model-Building as Search in Matrix Spaces
Many reported discovery systems build discrete models of hidden structure, properties, or processes in the diverse fields of biology, chemistry, and physics. We show that the sear...
Raúl E. Valdés-Pérez, Jan M. ...
IDA
2009
Springer
14 years 7 months ago
Estimating Hidden Influences in Metabolic and Gene Regulatory Networks
We address the applicability of blind source separation (BSS) methods for the estimation of hidden influences in biological dynamic systems such as metabolic or gene regulatory net...
Florian Blöchl, Fabian J. Theis