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TIFS
2008
102views more  TIFS 2008»
14 years 11 months ago
Insertion, Deletion Codes With Feature-Based Embedding: A New Paradigm for Watermark Synchronization With Applications to Speech
A framework is proposed for synchronization in feature-based data embedding systems that is tolerant of errors in estimated features. The method combines feature-based embedding wi...
David J. Coumou, Gaurav Sharma
BMCBI
2005
162views more  BMCBI 2005»
14 years 11 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
BMCBI
2005
169views more  BMCBI 2005»
14 years 11 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
BMCBI
2005
107views more  BMCBI 2005»
14 years 11 months ago
ProbeMaker: an extensible framework for design of sets of oligonucleotide probes
Background: Procedures for genetic analyses based on oligonucleotide probes are powerful tools that can allow highly parallel investigations of genetic material. Such procedures r...
Johan Stenberg, Mats Nilsson, Ulf Landegren
BMCBI
2005
152views more  BMCBI 2005»
14 years 11 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer