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» Power and sample size estimation in microarray studies
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COLT
2010
Springer
14 years 12 months ago
Forest Density Estimation
We study graph estimation and density estimation in high dimensions, using a family of density estimators based on forest structured undirected graphical models. For density estim...
Anupam Gupta, John D. Lafferty, Han Liu, Larry A. ...
BMCBI
2008
115views more  BMCBI 2008»
15 years 2 months ago
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson corre...
Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung S...
BMCBI
2010
91views more  BMCBI 2010»
15 years 2 months ago
Algorithm-driven Artifacts in median polish summarization of Microarray data
Background: High-throughput measurement of transcript intensities using Affymetrix type oligonucleotide microarrays has produced a massive quantity of data during the last decade....
Federico M. Giorgi, Anthony M. Bolger, Marc Lohse,...
ISQED
2007
IEEE
372views Hardware» more  ISQED 2007»
15 years 8 months ago
From Finance to Flip Flops: A Study of Fast Quasi-Monte Carlo Methods from Computational Finance Applied to Statistical Circuit
Problems in computational finance share many of the characteristics that challenge us in statistical circuit analysis: high dimensionality, profound nonlinearity, stringent accura...
Amith Singhee, Rob A. Rutenbar
124
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BIOINFORMATICS
2005
72views more  BIOINFORMATICS 2005»
15 years 1 months ago
Use of within-array replicate spots for assessing differential expression in microarray experiments
Motivation. Spotted arrays are often printed with probes in duplicate or triplicate, but current methods for assessing differential expression are not able to make full use of the...
Gordon K. Smyth, Joëlle Michaud, Hamish S. Sc...