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» Practical Preference Relations for Large Data Sets
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WWW
2004
ACM
16 years 5 months ago
Dynamic assembly of learning objects
This paper describes one solution to the problem of how to select sequence, and link Web resources into a coherent, focused organization for instruction that addresses a user'...
Robert G. Farrell, Soyini D. Liburd, John C. Thoma...
153
Voted
BMCBI
2010
112views more  BMCBI 2010»
15 years 5 months ago
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Background: Empirical scoring functions have proven useful in protein structure modeling. Most such scoring functions depend on protein side chain conformations. However, backbone...
Andrew J. Bordner
BMCBI
2004
106views more  BMCBI 2004»
15 years 5 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...
BMCBI
2008
211views more  BMCBI 2008»
15 years 5 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2005
106views more  BMCBI 2005»
15 years 5 months ago
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution
Background: General protein evolution models help determine the baseline expectations for the evolution of sequences, and they have been extensively useful in sequence analysis an...
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elis...