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» Practical and Optimal String Matching
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DIS
2000
Springer
15 years 1 months ago
A Practical Algorithm to Find the Best Subsequence Patterns
Given two sets of strings, consider the problem to find a subsequence that is common to one set but never appears in the other set. The problem is known to be NP-complete. We gene...
Masahiro Hirao, Hiromasa Hoshino, Ayumi Shinohara,...
CPM
2004
Springer
144views Combinatorics» more  CPM 2004»
15 years 3 months ago
A Simple Optimal Representation for Balanced Parentheses
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...
Richard F. Geary, Naila Rahman, Rajeev Raman, Venk...
RECOMB
2002
Springer
15 years 10 months ago
String barcoding: uncovering optimal virus signatures
There are many critical situations when one needs to rapidly identify an unidentified pathogen from among a given set of previously sequenced pathogens. DNA or RNA hybridization c...
Sam Rash, Dan Gusfield
92
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ISMB
1998
14 years 11 months ago
Compression of Strings with Approximate Repeats
We describe a model for strings of characters that is loosely based on the Lempel Ziv model with the addition that a repeated substring can be an approximate match to the original...
Lloyd Allison, Timothy Edgoose, Trevor I. Dix
FUIN
2008
80views more  FUIN 2008»
14 years 9 months ago
External Memory Algorithms for String Problems
In this paper we present external memory algorithms for some string problems. External memory algorithms have been developed in many research areas, as the speed gap between fast ...
Kangho Roh, Maxime Crochemore, Costas S. Iliopoulo...