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ICPP
2006
IEEE
15 years 10 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
BMCBI
2010
122views more  BMCBI 2010»
15 years 4 months ago
An automated framework for understanding structural variations in the binding grooves of MHC class II molecules
Background: MHC/HLA class II molecules are important components of the immune system and play a critical role in processes such as phagocytosis. Understanding peptide recognition ...
Kalidas Yeturu, Tapani Utriainen, Graham J. L. Kem...
MCS
2006
Springer
15 years 4 months ago
A phase-field method for interface-tracking simulation of two-phase flows
For interface-tracking simulation of two-phase flows, we propose a new computational method, NS-PFM, combining Navier-Stokes (NS) equations with phase-field model (PFM). Based on ...
Naoki Takada, Masaki Misawa, Akio Tomiyama
BMCBI
2010
191views more  BMCBI 2010»
14 years 11 months ago
Molecular dynamics simulation studies and in vitro site directed mutagenesis of avian beta-defensin Apl_AvBD2
Background: Defensins comprise a group of antimicrobial peptides, widely recognized as important elements of the innate immune system in both animals and plants. Cationicity, rath...
Soja Saghar Soman, Krishnankutty Chandrika Sivakum...
AUTOMATICA
2008
101views more  AUTOMATICA 2008»
15 years 4 months ago
Constrained linear system with disturbance: Convergence under disturbance feedback
This paper proposes a disturbance-based control parametrization under the Model Predictive Control framework for constrained linear discrete time systems with bounded additive dis...
Chen Wang, Chong Jin Ong, Melvyn Sim