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» Predicting Nucleolar Proteins Using Support-Vector Machines
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BMCBI
2007
113views more  BMCBI 2007»
15 years 3 months ago
Analysis and prediction of antibacterial peptides
Background: Antibacterial peptides are important components of the innate immune system, used by the host to protect itself from different types of pathogenic bacteria. Over the l...
Sneh Lata, B. K. Sharma, G. P. S. Raghava
141
Voted
JCP
2008
104views more  JCP 2008»
15 years 3 months ago
Analysis and Improved Recognition of Protein Names Using Transductive SVM
We first analyzed protein names using various dictionaries and databases and found five problems with protein names; i.e., the treatment of special characters, the treatment of hom...
Masaki Murata, Tomohiro Mitsumori, Kouichi Doi
125
Voted
CIBB
2008
15 years 5 months ago
Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
Dino Franklin, Somdutta Dhir, Sándor Pongor
126
Voted
BIBE
2007
IEEE
167views Bioinformatics» more  BIBE 2007»
15 years 7 months ago
Assessing the Performance of Macromolecular Sequence Classifiers
Machine learning approaches offer some of the most cost-effective approaches to building predictive models (e.g., classifiers) in a broad range of applications in computational bio...
Cornelia Caragea, Jivko Sinapov, Vasant Honavar, D...
169
Voted
BMCBI
2011
14 years 10 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...