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» Predicting Peroxisomal Proteins
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BIBM
2009
IEEE
140views Bioinformatics» more  BIBM 2009»
15 years 1 months ago
A Protein-Protein Interaction Prediction Method Embracing Intra-protein Domain Cohesion Information
Recently, many computational methods for predicting protein-protein interaction (PPI) have been developed by utilizing domain-domain interaction or associated information. However...
Woo-Hyuk Jang, Suk Hoon Jung, Bo-ra Hyun, Dong-Soo...
BICOB
2009
Springer
15 years 1 months ago
Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Predictio
Protein-protein interaction plays critical roles in cellular functions. In this work, we propose a computational method to predict protein-protein interaction by using support vec...
Alvaro J. González, Li Liao
BIOCOMP
2006
14 years 11 months ago
A New Algorithm to Predict the Active Sites Using Amino Acid Vectors and Biochemical features of Surface Patches
: It is a very active research field to predict protein functions and active sites by protein surface patches. It is especially challengeable to predict the active sites by structu...
Sunshin Kim, Chung Rhee, Jungdo Choi, Yong Je Chun...
CORR
2010
Springer
144views Education» more  CORR 2010»
14 years 9 months ago
CLP-based protein fragment assembly
Abstract. The paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments ar...
Alessandro Dal Palù, Agostino Dovier, Feder...
GCB
2010
Springer
122views Biometrics» more  GCB 2010»
14 years 7 months ago
Quantitative Comparison of Genomic-Wide Protein Domain Distributions
Abstract: Investigations into the origins and evolution of regulatory mechanisms require quantitative estimates of the abundance and co-occurrence of functional protein domains amo...
Arli A. Parikesit, Peter F. Stadler, Sonja J. Proh...