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157
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BMCBI
2008
146views more  BMCBI 2008»
15 years 3 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
TCSB
2010
15 years 1 months ago
Biomodel Engineering - From Structure to Behavior
Biomodel engineering is the science of designing, constructing and analyzing computational models of biological systems. It forms a systematic and powerful extension of earlier mat...
Rainer Breitling, Robin Donaldson, David R. Gilber...
POPL
2004
ACM
16 years 3 months ago
Atomizer: a dynamic atomicity checker for multithreaded programs
Ensuring the correctness of multithreaded programs is difficult, due to the potential for unexpected interactions between concurrent threads. Much previous work has focused on det...
Cormac Flanagan, Stephen N. Freund
POPL
2010
ACM
16 years 8 days ago
Dependent types and program equivalence
The definition of type equivalence is one of the most important design issues for any typed language. In dependentlytyped languages, because terms appear in types, this definition...
Jianzhou Zhao, Limin Jia, Stephanie Weirich, Vilhe...
126
Voted
BMCBI
2006
145views more  BMCBI 2006»
15 years 2 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...