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BMCBI
2010
143views more  BMCBI 2010»
14 years 11 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
BMCBI
2010
109views more  BMCBI 2010»
14 years 11 months ago
Free energy estimation of short DNA duplex hybridizations
Background: Estimation of DNA duplex hybridization free energy is widely used for predicting cross-hybridizations in DNA computing and microarray experiments. A number of software...
Dan C. Tulpan, Mirela Andronescu, Serge Leger
BMCBI
2006
130views more  BMCBI 2006»
14 years 11 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...
CSFW
2009
IEEE
15 years 5 months ago
Updatable Security Views
Security views are a flexible and effective mechanism for controlling access to confidential information. Rather than allowing untrusted users to access source data directly, th...
J. Nathan Foster, Benjamin C. Pierce, Steve Zdance...
ICSE
2010
IEEE-ACM
15 years 1 months ago
SMT-based bounded model checking for multi-threaded software in embedded systems
The transition from single-core to multi-core processors has made multi-threaded software an important subject over the last years in computer-aided verification. Model checkers ...
Lucas Cordeiro