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BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
15 years 5 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 5 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
100
Voted
CODES
2005
IEEE
15 years 4 months ago
SOMA: a tool for synthesizing and optimizing memory accesses in ASICs
Arbitrary memory dependencies and variable latency memory systems are major obstacles to the synthesis of large-scale ASIC systems in high-level synthesis. This paper presents SOM...
Girish Venkataramani, Tiberiu Chelcea, Seth Copen ...
MOBICOM
2004
ACM
15 years 4 months ago
Exploiting medium access diversity in rate adaptive wireless LANs
Recent years have seen the growing popularity of multi-rate wireless network devices (e.g., 802.11a cards) that can exploit variations in channel conditions and improve overall ne...
Zhengrong Ji, Yi Yang, Junlan Zhou, Mineo Takai, R...
103
Voted
ICS
2003
Tsinghua U.
15 years 4 months ago
Inferential queueing and speculative push for reducing critical communication latencies
Communication latencies within critical sections constitute a major bottleneck in some classes of emerging parallel workloads. In this paper, we argue for the use of Inferentially...
Ravi Rajwar, Alain Kägi, James R. Goodman