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SCAM
2007
IEEE
15 years 5 months ago
Finding Inputs that Reach a Target Expression
We present an automated program analysis, called Reach, to compute program inputs that cause evaluation of explicitly-marked target expressions. Reach has a range of applications ...
Matthew Naylor, Colin Runciman
VSTTE
2005
Springer
15 years 4 months ago
Implications of a Data Structure Consistency Checking System
Abstract. We present a framework for verifying that programs correctly preserve important data structure consistency properties. Results from our implemented system indicate that o...
Viktor Kuncak, Patrick Lam, Karen Zee, Martin C. R...
BMCBI
2006
111views more  BMCBI 2006»
14 years 11 months ago
Using ESTs to improve the accuracy of de novo gene prediction
Background: ESTs are a tremendous resource for determining the exon-intron structures of genes, but even extensive EST sequencing tends to leave many exons and genes untouched. Ge...
Chaochun Wei, Michael R. Brent
76
Voted
BMCBI
2004
150views more  BMCBI 2004»
14 years 11 months ago
Inter-residue distances derived from fold contact propensities correlate with evolutionary substitution costs
Background: The wealth of information on protein structure has led to a variety of statistical analyses of the role played by individual amino acid types in the protein fold. In p...
Gareth Williams, Patrick Doherty
BMCBI
2010
174views more  BMCBI 2010»
14 years 11 months ago
The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based h
Background: To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight...
Junbai Wang