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ISMB
1994
15 years 14 days ago
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
We describe and demonstrate the effectiveness of a method of predicting protein secondary structures, sheet regions in particular, using a class of stochastic tree grammars as rep...
Hiroshi Mamitsuka, Naoki Abe
BMCBI
2007
128views more  BMCBI 2007»
14 years 11 months ago
A Bayesian nonparametric method for prediction in EST analysis
Background: Expressed sequence tags (ESTs) analyses are a fundamental tool for gene identification in organisms. Given a preliminary EST sample from a certain library, several sta...
Antonio Lijoi, Ramsés H. Mena, Igor Prü...
CP
1998
Springer
15 years 3 months ago
A Framework for Assertion-Based Debugging in Constraint Logic Programming
Abstract. We propose a general framework for assertion-based debugging of constraint logic programs. Assertions are linguistic constructions which allow expressing properties of pr...
Germán Puebla, Francisco Bueno, Manuel V. H...
BMCBI
2008
101views more  BMCBI 2008»
14 years 11 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
ISSTA
2009
ACM
15 years 5 months ago
Automatic system testing of programs without test oracles
Metamorphic testing has been shown to be a simple yet effective technique in addressing the quality assurance of applications that do not have test oracles, i.e., for which it is ...
Christian Murphy, Kuang Shen, Gail E. Kaiser