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» Predicting Segmentation Accuracy for Biological Cell Images
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BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
14 years 12 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
MICCAI
2009
Springer
16 years 26 days ago
Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach
Abstract. Optical coherence tomography (OCT) is a non-invasive, depth resolved imaging modality that has become a prominent ophthalmic diagnostic technique. We present an automatic...
Azadeh Yazdanpanah, Benjamin Smith 0002, Ghassan H...
BMCBI
2010
105views more  BMCBI 2010»
14 years 11 months ago
Predicting phenotypic traits of prokaryotes from protein domain frequencies
Background: Establishing the relationship between an organism's genome sequence and its phenotype is a fundamental challenge that remains largely unsolved. Accurately predict...
Thomas Lingner, Stefanie Mühlhausen, Toni Gab...
BMCBI
2010
268views more  BMCBI 2010»
14 years 11 months ago
A high-level 3D visualization API for Java and ImageJ
Background: Current imaging methods such as Magnetic Resonance Imaging (MRI), Confocal microscopy, Electron Microscopy (EM) or Selective Plane Illumination Microscopy (SPIM) yield...
Benjamin Schmid, Johannes E. Schindelin, Albert Ca...
TCBB
2010
77views more  TCBB 2010»
14 years 6 months ago
Multidimensional Profiling of Cell Surface Proteins and Nuclear Markers
Cell membrane proteins play an important role in tissue architecture and cell-cell communication. We hypothesize that segmentation and multidimensional characterization of the dist...
Ju Han, Hang Chang, Kumari L. Andarawewa, Paul Yas...