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    JCB
    2008
    90views more  JCB 2008»
    A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
    14 years 9 months ago
    A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
    Download  www.cs.ucdavis.edu
    Resolving the general organizational principles that govern the interactions during transcriptional gene regulation has great relevance for understanding disease progression, biof...
    Vladimir Filkov, Nameeta Shah
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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    14 years 10 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    Download  www.biomedcentral.com
    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    BMCBI
    2007
    147views more  BMCBI 2007»
    Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
    14 years 10 months ago
    Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
    Download  www.biomedcentral.com
    Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain specific combinations of binding sites for various transcription factors. Althoug...
    Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, ...
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    NAR
    2011
    223views Computer Vision» more  NAR 2011»
    ODB: a database for operon organizations, 2011 update
    14 years 18 days ago
    ODB: a database for operon organizations, 2011 update
    Download  nar.oxfordjournals.org
    ODB (Operon DataBase) aims to collect data of all known and conserved operons in completely sequenced genomes. Three newly updated features of this database have been added as fol...
    Shujiro Okuda, Akiyasu C. Yoshizawa
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    RECOMB
    2006
    Springer
    134views Computational Biology» more  RECOMB 2006»
    Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
    15 years 10 months ago
    Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
    Download  www.cs.tufts.edu
    MicroRNAs (miRNAs) have recently been discovered as an important class of non-coding RNA genes that play a major role in regulating gene expression, providing a means to control th...
    Jim C. Huang, Quaid Morris, Brendan J. Frey
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