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» Predicting diverse subsets using structural SVMs
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BMCBI
2010
141views more  BMCBI 2010»
14 years 12 months ago
Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles
Background: Enzymes belonging to acyl:CoA synthetase (ACS) superfamily activate wide variety of substrates and play major role in increasing the structural and functional diversit...
Pankaj Khurana, Rajesh S. Gokhale, Debasisa Mohant...
NAACL
2007
15 years 1 months ago
To Memorize or to Predict: Prominence labeling in Conversational Speech
The immense prosodic variation of natural conversational speech makes it challenging to predict which words are prosodically prominent in this genre. In this paper, we examine a n...
Ani Nenkova, Jason Brenier, Anubha Kothari, Sasha ...
BIBE
2005
IEEE
15 years 5 months ago
Improved Phylogenetic Motif Detection Using Parsimony
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
Usman Roshan, Dennis R. Livesay, David La
BMCBI
2005
162views more  BMCBI 2005»
14 years 11 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
BMCBI
2006
100views more  BMCBI 2006»
14 years 11 months ago
STAR: predicting recombination sites from amino acid sequence
Background: Designing novel proteins with site-directed recombination has enormous prospects. By locating effective recombination sites for swapping sequence parts, the probabilit...
Denis C. Bauer, Mikael Bodén, Ricarda Thier...