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» Predicting protein function from domain content
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BMCBI
2006
133views more  BMCBI 2006»
15 years 5 months ago
Choosing negative examples for the prediction of protein-protein interactions
The protein-protein interaction networks of even well-studied model organisms are sketchy at best, highlighting the continued need for computational methods to help direct experim...
Asa Ben-Hur, William Stafford Noble
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
15 years 10 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
BIBM
2010
IEEE
277views Bioinformatics» more  BIBM 2010»
15 years 3 months ago
Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptors
ATP is a ubiquitous nucleotide that provides energy for cellular activities, catalyzes chemical reactions, and is involved in cellular signaling. The knowledge of the ATPprotein in...
Ke Chen 0003, Marcin J. Mizianty, Lukasz A. Kurgan
BICOB
2009
Springer
16 years 3 days ago
Association Analysis Techniques for Bioinformatics Problems
Association analysis is one of the most popular analysis paradigms in data mining. Despite the solid foundation of association analysis and its potential applications, this group o...
Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pan...
EVOW
2009
Springer
16 years 9 days ago
Clustering Metagenome Short Reads Using Weighted Proteins
Abstract. This paper proposes a new knowledge-based method for clustering metagenome short reads. The method incorporates biological knowledge in the clustering process, by means o...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...