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» Predicting protein function from domain content
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BMCBI
2005
189views more  BMCBI 2005»
15 years 5 months ago
A sentence sliding window approach to extract protein annotations from biomedical articles
Background: Within the emerging field of text mining and statistical natural language processing (NLP) applied to biomedical articles, a broad variety of techniques have been deve...
Martin Krallinger, Maria Padron, Alfonso Valencia
BMCBI
2008
138views more  BMCBI 2008»
15 years 5 months ago
SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803
Background: Cyanobacteria are model organisms for studying photosynthesis, carbon and nitrogen assimilation, evolution of plant plastids, and adaptability to environmental stresse...
Woo-Yeon Kim, Sungsoo Kang, Byoung-Chul Kim, Jeehy...
ERCIMDL
2001
Springer
178views Education» more  ERCIMDL 2001»
15 years 10 months ago
Customizable Retrieval Functions Based on User Tasks in the Cultural Heritage Domain
The cultural heritage domain dealing with digital surrogates of rare and fragile historic artifacts is one of the most promising areas for establishing collaboratories, i.e. shared...
Holger Brocks, Ulrich Thiel, Adelheit Stein, Andre...
ADC
2006
Springer
158views Database» more  ADC 2006»
15 years 11 months ago
Dimensionality reduction in patch-signature based protein structure matching
Searching bio-chemical structures is becoming an important application domain of information retrieval. This paper introduces a protein structure matching problem and formulates i...
Zi Huang, Xiaofang Zhou, Dawei Song, Peter Bruza
RECOMB
2007
Springer
16 years 5 months ago
Reconstructing the Topology of Protein Complexes
Abstract. Recent advances in high-throughput experimental techniques have enabled the production of a wealth of protein interaction data, rich in both quantity and variety. While t...
Allister Bernard, David S. Vaughn, Alexander J. Ha...