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» Predicting protein function from domain content
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NAR
2007
128views more  NAR 2007»
15 years 5 months ago
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...
BMCBI
2006
202views more  BMCBI 2006»
15 years 5 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...
CEC
2005
IEEE
15 years 11 months ago
XCS with computed prediction for the learning of Boolean functions
Computed prediction represents a major shift in learning classifier system research. XCS with computed prediction, based on linear approximators, has been applied so far to functi...
Pier Luca Lanzi, Daniele Loiacono, Stewart W. Wils...
BCB
2010
140views Bioinformatics» more  BCB 2010»
15 years 16 days ago
Guiding belief propagation using domain knowledge for protein-structure determination
A major bottleneck in high-throughput protein crystallography is producing protein-structure models from an electrondensity map. In previous work, we developed Acmi, a probabilist...
Ameet Soni, Craig A. Bingman, Jude W. Shavlik
182
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NAR
2011
207views Computer Vision» more  NAR 2011»
14 years 8 months ago
PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea
The subcellular localization (SCL) of a microbial protein provides clues about its function, its suitability as a drug, vaccine or diagnostic target and aids experimental design. ...
Nancy Y. Yu, Matthew R. Laird, Cory Spencer, Fiona...