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» Predicting protein function from domain content
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BMCBI
2007
94views more  BMCBI 2007»
15 years 5 months ago
False positive reduction in protein-protein interaction predictions using gene ontology annotations
Background: Many crucial cellular operations such as metabolism, signalling, and regulations are based on protein-protein interactions. However, the lack of robust protein-protein...
Mahmood A. Mahdavi, Yen-Han Lin
IPPS
2000
IEEE
15 years 10 months ago
Predicting Performance on SMPs. A Case Study: The SGI Power Challenge
We study the issue of performance prediction on the SGIPower Challenge, a typical SMP. On such a platform, the cost of memory accesses depends on their locality and on contention ...
Nancy M. Amato, Jack Perdue, Mark M. Mathis, Andre...
BMCBI
2010
117views more  BMCBI 2010»
15 years 5 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
194
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NAR
2010
107views more  NAR 2010»
15 years 10 days ago
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
FlyTF (http://www.flytf.org) is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly Drosophila melano...
Ulrike Pfreundt, Daniel P. James, Susan Tweedie, D...
NAR
2006
74views more  NAR 2006»
15 years 5 months ago
NOPdb: Nucleolar Proteome Database
The Nucleolar Proteome Database (NOPdb) archives data on .700 proteins that were identified by multiple mass spectrometry (MS) analyses from highly purified preparations of human ...
Anthony Kar Lun Leung, Laura Trinkle-Mulcahy, Yun ...