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» Predicting protein functions with message passing algorithms
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BMCBI
2006
102views more  BMCBI 2006»
14 years 9 months ago
Protein secondary structure prediction for a single-sequence using hidden semi-Markov models
Background: The accuracy of protein secondary structure prediction has been improving steadily towards the 88% estimated theoretical limit. There are two types of prediction algor...
Zafer Aydin, Yucel Altunbasak, Mark Borodovsky
CSB
2005
IEEE
115views Bioinformatics» more  CSB 2005»
15 years 3 months ago
A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions
With hierarchical clustering methods, divisions or fusions, once made, are irrevocable. As a result, when two elements in a bottom-up algorithm are assigned to one cluster, they c...
Huimin Geng, Hesham H. Ali
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BMCBI
2006
114views more  BMCBI 2006»
14 years 9 months ago
Evaluation and comparison of mammalian subcellular localization prediction methods
Background: Determination of the subcellular location of a protein is essential to understanding its biochemical function. This information can provide insight into the function o...
Josefine Sprenger, J. Lynn Fink, Rohan D. Teasdale
BMCBI
2007
216views more  BMCBI 2007»
14 years 9 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
TRIDENTCOM
2006
IEEE
15 years 3 months ago
A reliable optimization on distributed mutual exclusion algorithm
– This paper presents a reliable decentralized mutual exclusion algorithm for distributed systems in which processes communicate by asynchronous message passing. When any failure...
Moharram Challenger, Peyman Bayat, Mohammad Reza M...