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» Predicting protein functions with message passing algorithms
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BMCBI
2010
150views more  BMCBI 2010»
14 years 9 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
PDPTA
2007
14 years 11 months ago
Communication with Super Flexible Messaging
Abstract Super Flexible Messaging (SFM) provides a powerful and elegant message passing abstraction for transferring arbitrary data between remote processes. SFM achieves the simpl...
Alexey Fedosov, Gregory Benson
WFLP
2000
Springer
163views Algorithms» more  WFLP 2000»
15 years 1 months ago
Cooperative Constraint Functional Logic Programming
We describe the current status of the development of CFLP, a system which aims at the integration of the best features of functional logic programming (FLP), cooperative constrain...
Mircea Marin, Tetsuo Ida
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
15 years 2 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
BMCBI
2007
95views more  BMCBI 2007»
14 years 9 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao