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» Predicting protein functions with message passing algorithms
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ICCAD
2008
IEEE
127views Hardware» more  ICCAD 2008»
15 years 6 months ago
Design and optimization of a digital microfluidic biochip for protein crystallization
Proteins crystallization is a commonly used technique for protein analysis and subsequent drug design. It predicts the three-dimensional arrangement of the constituent amino acids...
Tao Xu, Krishnendu Chakrabarty, Vamsee K. Pamula
BMCBI
2011
14 years 4 months ago
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
Background: Atomic Solvation Parameters (ASP) model has been proven to be a very successful method of calculating the binding free energy of protein complexes. This suggests that ...
Lin Li, Dachuan Guo, Yangyu Huang, Shiyong Liu, Yi...
BMCBI
2004
265views more  BMCBI 2004»
14 years 9 months ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...
BMCBI
2010
110views more  BMCBI 2010»
14 years 8 months ago
Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
Background: Exon arrays provide a way to measure the expression of different isoforms of genes in an organism. Most of the procedures to deal with these arrays are focused on gene...
Miguel A. Anton, Ander Aramburu, Angel Rubio
AOSD
2007
ACM
15 years 1 months ago
Generating parallel applications for distributed memory systems using aspects, components, and patterns
Developing and debugging parallel programs particularly for distributed memory architectures is still a difficult task. The most popular approach to developing parallel programs f...
Purushotham V. Bangalore