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» Predicting protein functions with message passing algorithms
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BMCBI
2006
98views more  BMCBI 2006»
14 years 11 months ago
Optimised amino acid specific weighting factors for unbound protein docking
Background: One of the most challenging aspects of protein-protein docking is the inclusion of flexibility into the docking procedure. We developed a postfilter where the grid-rep...
Philipp Heuser, Dietmar Schomburg
BMCBI
2010
103views more  BMCBI 2010»
14 years 11 months ago
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
Background: Post-translational modifications (PTMs) have a key role in regulating cell functions. Consequently, identification of PTM sites has a significant impact on understandi...
Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, D...
IJBRA
2007
80views more  IJBRA 2007»
14 years 11 months ago
On predicting secondary structure transition
A function of a protein is dependent on its structure; therefore, predicting a protein structure from an amino acid sequence is an active area of research. Optimally predicting a ...
Raja Loganantharaj, Vivek Philip
CISS
2010
IEEE
14 years 3 months ago
Unconstrained minimization of quadratic functions via min-sum
—Gaussian belief propagation is an iterative algorithm for computing the mean of a multivariate Gaussian distribution. Equivalently, the min-sum algorithm can be used to compute ...
Nicholas Ruozzi, Sekhar Tatikonda
TCBB
2010
104views more  TCBB 2010»
14 years 9 months ago
Fast Hinge Detection Algorithms for Flexible Protein Structures
— Analysis of conformational changes is one of the keys to the understanding of protein functions and interactions. For the analysis, we often compare two protein structures, tak...
Tetsuo Shibuya