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» Predicting protein functions with message passing algorithms
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EVOW
2010
Springer
15 years 29 days ago
Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments
A challenging problem in bioinformatics is the detection of residues that account for protein function specificity, not only in order to gain deeper insight in the nature of functi...
Elena Marchiori
SDM
2008
SIAM
121views Data Mining» more  SDM 2008»
14 years 11 months ago
Integration of Multiple Networks for Robust Label Propagation
Transductive inference on graphs such as label propagation algorithms is receiving a lot of attention. In this paper, we address a label propagation problem on multiple networks a...
Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama
76
Voted
BMCBI
2004
122views more  BMCBI 2004»
14 years 9 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich
BMCBI
2006
117views more  BMCBI 2006»
14 years 9 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
TMC
2008
127views more  TMC 2008»
14 years 9 months ago
Time and Energy Complexity of Distributed Computation of a Class of Functions in Wireless Sensor Networks
We consider a scenario in which a wireless sensor network is formed by randomly deploying n sensors to measure some spatial function over a field, with the objective of computing a...
Nilesh Khude, Anurag Kumar, Aditya Karnik