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» Predicting protein functions with message passing algorithms
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TIT
2010
170views Education» more  TIT 2010»
14 years 6 months ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...
BMCBI
2010
167views more  BMCBI 2010»
14 years 11 months ago
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach
Background: Transcriptional gene regulation is one of the most important mechanisms in controlling many essential cellular processes, including cell development, cell-cycle contro...
Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pag...
ICPP
2002
IEEE
15 years 4 months ago
Region Synchronization in Message Passing Systems
The development of correct synchronization code for distributed programs is a challenging task. In this paper, we propose an aspect oriented technique for developing synchronizati...
Gurdip Singh, Ye Su
BIRD
2007
Springer
112views Bioinformatics» more  BIRD 2007»
15 years 5 months ago
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server
An online protein interaction server has been designed and implemented to make predictions for 256 nonhomologous protein-protein interaction sites using patch analysis. Predictions...
Susan Jones, Yoichi Mukarami
CCGRID
2004
IEEE
15 years 3 months ago
Routing and resource discovery in Phoenix Grid-enabled message passing library
We describe design and implementation of a "Gridenabled" message passing library, in the context of Phoenix message passing model. It supports (1) message routing betwee...
Kenji Kaneda, Kenjiro Taura, Akinori Yonezawa