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» Predicting protein functions with message passing algorithms
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NIPS
2007
14 years 11 months ago
New Outer Bounds on the Marginal Polytope
We give a new class of outer bounds on the marginal polytope, and propose a cutting-plane algorithm for efficiently optimizing over these constraints. When combined with a concav...
David Sontag, Tommi Jaakkola
BMCBI
2006
130views more  BMCBI 2006»
14 years 9 months ago
MicroTar: predicting microRNA targets from RNA duplexes
Background: The accurate prediction of a comprehensive set of messenger RNAs (targets) regulated by animal microRNAs (miRNAs) remains an open problem. In particular, the predictio...
Rahul Thadani, Martti T. Tammi
BMCBI
2011
14 years 4 months ago
OrthoInspector: comprehensive orthology analysis and visual exploration
Background: The accurate determination of orthology and inparalogy relationships is essential for comparative sequence analysis, functional gene annotation and evolutionary studie...
Benjamin Linard, Julie D. Thompson, Olivier Poch, ...
BMCBI
2010
131views more  BMCBI 2010»
14 years 7 months ago
A two-step site and mRNA-level model for predicting microRNA targets
Background: Despite experiments showing that the number of microRNA (miRNA) target sites is critical for miRNA targeting, most existing methods focus on identifying individual miR...
Takaya Saito, Pål Sætrom
INFOCOM
2005
IEEE
15 years 3 months ago
Time and energy complexity of distributed computation in wireless sensor networks
— We consider a scenario where a wireless sensor network is formed by randomly deploying n sensors to measure some spatial function over a field, with the objective of computing...
Nilesh Khude, Anurag Kumar, Aditya Karnik