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» Predicting protein functions with message passing algorithms
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BMCBI
2010
101views more  BMCBI 2010»
14 years 9 months ago
Enrichment of homologs in insignificant BLAST hits by co-complex network alignment
Background: Homology is a crucial concept in comparative genomics. The algorithm probably most widely used for homology detection in comparative genomics, is BLAST. Usually a stri...
Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst,...
93
Voted
EVOW
2004
Springer
15 years 3 months ago
Two-Step Genetic Programming for Optimization of RNA Common-Structure
We present an algorithm for identifying putative non-coding RNA (ncRNA) using an RCSG (RNA Common-Structural Grammar) and show the effectiveness of the algorithm. The algorithm con...
Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zh...
COCOA
2011
Springer
13 years 9 months ago
Algorithmic Aspects of Heterogeneous Biological Networks Comparison
Biological networks are commonly used to model molecular activity within the cell. Recent experimental studies have shown that the detection of conserved subnetworks across several...
Guillaume Blin, Guillaume Fertin, Hafedh Mohamed-B...
76
Voted
ICML
2008
IEEE
15 years 10 months ago
Efficiently solving convex relaxations for MAP estimation
The problem of obtaining the maximum a posteriori (map) estimate of a discrete random field is of fundamental importance in many areas of Computer Science. In this work, we build ...
M. Pawan Kumar, Philip H. S. Torr
PC
2007
147views Management» more  PC 2007»
14 years 9 months ago
Thread-safety in an MPI implementation: Requirements and analysis
The MPI-2 Standard has carefully specified the interaction between MPI and usercreated threads. The goal of this specification is to allow users to write multithreaded MPI progr...
William Gropp, Rajeev Thakur