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» Predicting protein functions with message passing algorithms
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BMCBI
2011
14 years 4 months ago
RAG: An Update to the RNA-As-Graphs Resource
Background: In 2004, we presented a web resource for stimulating the search for novel RNAs, RNA-As-Graphs (RAG), which classified, catalogued, and predicted RNA secondary structur...
Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tam...
BMCBI
2010
110views more  BMCBI 2010»
15 years 1 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
RECOMB
2006
Springer
16 years 1 months ago
Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
MicroRNAs (miRNAs) have recently been discovered as an important class of non-coding RNA genes that play a major role in regulating gene expression, providing a means to control th...
Jim C. Huang, Quaid Morris, Brendan J. Frey
INFOCOM
2006
IEEE
15 years 7 months ago
Utility-Optimal Medium Access Control: Reverse and Forward Engineering
— This paper analyzes and designs medium access control (MAC) protocols for wireless ad-hoc networks through the network utility maximization (NUM) framework. We first reverse-e...
Jang-Won Lee, Mung Chiang, A. Robert Calderbank
SIGMETRICS
2008
ACM
181views Hardware» more  SIGMETRICS 2008»
15 years 1 months ago
Counter braids: a novel counter architecture for per-flow measurement
Fine-grained network measurement requires routers and switches to update large arrays of counters at very high link speed (e.g. 40 Gbps). A naive algorithm needs an infeasible amo...
Yi Lu, Andrea Montanari, Balaji Prabhakar, Sarang ...