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» Predicting protein functions with message passing algorithms
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BMCBI
2010
96views more  BMCBI 2010»
14 years 11 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
KDD
2008
ACM
147views Data Mining» more  KDD 2008»
15 years 11 months ago
Extracting shared subspace for multi-label classification
Multi-label problems arise in various domains such as multitopic document categorization and protein function prediction. One natural way to deal with such problems is to construc...
Shuiwang Ji, Lei Tang, Shipeng Yu, Jieping Ye
ROCAI
2004
Springer
15 years 4 months ago
Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve
We introduce a model class for statistical learning which is based on mixtures of propositional rules. In our mixture model, the weight of a rule is not uniform over the entire ins...
Tobias Sing, Niko Beerenwinkel, Thomas Lengauer
BMCBI
2007
148views more  BMCBI 2007»
14 years 11 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
SPAA
1993
ACM
15 years 3 months ago
Supporting Sets of Arbitrary Connections on iWarp Through Communication Context Switches
In this paper we introduce the ConSet communication model for distributed memory parallel computers. The communication needs of an application program can be satisfied by some ar...
Anja Feldmann, Thomas Stricker, Thomas E. Warfel