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BMCBI
2008
89views more  BMCBI 2008»
14 years 10 months ago
R/parallel - speeding up bioinformatics analysis with R
Background: R is the preferred tool for statistical analysis of many bioinformaticians due in part to the increasing number of freely available analytical methods. Such methods ca...
Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
94
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PARA
2004
Springer
15 years 3 months ago
Cache Optimizations for Iterative Numerical Codes Aware of Hardware Prefetching
Cache optimizations typically include code transformations to increase the locality of memory accesses. An orthogonal approach is to enable for latency hiding by introducing prefet...
Josef Weidendorfer, Carsten Trinitis
CP
2004
Springer
15 years 3 months ago
A Hybrid Method for Planning and Scheduling
We combine mixed integer linear programming (MILP) and constraint programming (CP) to solve planning and scheduling problems. Tasks are allocated to facilities using MILP and sche...
John N. Hooker
JCC
2008
132views more  JCC 2008»
14 years 9 months ago
The implementation of a fast and accurate QM/MM potential method in Amber
Abstract: Version 9 of the Amber simulation programs includes a new semi-empirical hybrid QM/MM functionality. This includes support for implicit solvent (generalized Born) and for...
Ross C. Walker, Michael F. Crowley, David A. Case
PATMOS
2007
Springer
15 years 3 months ago
Optimization for Real-Time Systems with Non-convex Power Versus Speed Models
Abstract. Until now, the great majority of research in low-power systems has assumed a convex power model. However, recently, due to the confluence of emerging technological and ar...
Ani Nahapetian, Foad Dabiri, Miodrag Potkonjak, Ma...