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IPPS
2006
IEEE
15 years 3 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
SNPD
2007
14 years 11 months ago
Parallel analysis of polymorphic viral code using automated deduction system
As malicious code has become more sophisticated and pervasive, faster and more effective system for forensics and prevention is important. Particularly, quick analysis of polymorp...
Ruo Ando
IDA
2009
Springer
15 years 4 months ago
Selecting Computer Architectures by Means of Control-Flow-Graph Mining
Abstract Deciding which computer architecture provides the best performance for a certain program is an important problem in hardware design and benchmarking. While previous approa...
Frank Eichinger, Klemens Böhm
PROCEDIA
2011
14 years 17 days ago
A Multilevel Parallelism Support for Multi-Physics Coupling
A new challenge in scientific computing is to merge existing simulation models to create new higher fidelity combined (often multi-level) models. While this challenge has been a...
Fang Liu, Masha Sosonkina
TCBB
2010
114views more  TCBB 2010»
14 years 8 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...