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    BMCBI
    2007
    130views more  BMCBI 2007»
    A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
    14 years 10 months ago
    A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
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    Background: Proteins are the primary regulatory agents of transcription even though mRNA expression data alone, from systems like DNA microarrays, are widely used. In addition, th...
    Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra,...
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    BMCBI
    2006
    155views more  BMCBI 2006»
    A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
    14 years 10 months ago
    A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
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    Background: Studies of differential expression that use Affymetrix GeneChip arrays are often carried out with a limited number of replicates. Reasons for this include financial co...
    Anne-Mette K. Hein, Sylvia Richardson
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    BMCBI
    2006
    170views more  BMCBI 2006»
    Biclustering of gene expression data by non-smooth non-negative matrix factorization
    14 years 10 months ago
    Biclustering of gene expression data by non-smooth non-negative matrix factorization
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    Background: The extended use of microarray technologies has enabled the generation and accumulation of gene expression datasets that contain expression levels of thousands of gene...
    Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Fra...
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    BMCBI
    2008
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    Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
    14 years 10 months ago
    Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
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    Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
    Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
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    BMCBI
    2006
    164views more  BMCBI 2006»
    Evaluation of clustering algorithms for gene expression data
    14 years 10 months ago
    Evaluation of clustering algorithms for gene expression data
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    Background: Cluster analysis is an integral part of high dimensional data analysis. In the context of large scale gene expression data, a filtered set of genes are grouped togethe...
    Susmita Datta, Somnath Datta
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