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BMCBI
2006
127views more  BMCBI 2006»
14 years 12 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
BMCBI
2010
132views more  BMCBI 2010»
14 years 12 months ago
Error margin analysis for feature gene extraction
Background: Feature gene extraction is a fundamental issue in microarray-based biomarker discovery. It is normally treated as an optimization problem of finding the best predictiv...
Chi Kin Chow, Hai Long Zhu, Jessica Lacy, Winston ...
RECOMB
2003
Springer
16 years 4 days ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
RECOMB
2002
Springer
16 years 4 days ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
ICASSP
2009
IEEE
15 years 6 months ago
Robust cross-race gene expression analysis
This paper develops a Bayesian network (BN) predictor to profile cross-race gene expression data. Cross-race studies face more data variability than single-lab studies. Our desig...
Hsun-Hsien Chang, Marco Ramoni