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» Prediction of indirect interactions in proteins
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BMCBI
2011
14 years 5 months ago
Determinants of Antigenicity and Specificity in immune response for Protein Sequences
Background: Target specific antibodies are pivotal for the design of vaccines, immunodiagnostic tests, studies on proteomics for cancer biomarker discovery, identification of prot...
Yulong Wang, Wenjun Wu, Nicolas N. Negre, Kevin P....
CSB
2004
IEEE
116views Bioinformatics» more  CSB 2004»
15 years 5 months ago
In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity
One of the most remarkable properties of enzyme-substrate binding is the high substrate specificity among homologous enzymes. Identification of regions in enzymes that play an imp...
Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan...
BICOB
2009
Springer
15 years 8 months ago
Association Analysis Techniques for Bioinformatics Problems
Association analysis is one of the most popular analysis paradigms in data mining. Despite the solid foundation of association analysis and its potential applications, this group o...
Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pan...
SDM
2011
SIAM
307views Data Mining» more  SDM 2011»
14 years 4 months ago
Block-LDA: Jointly modeling entity-annotated text and entity-entity links
We present a model that improves entity entity link modeling in a mixed membership stochastic block model, by jointly modeling links with text about the entities that are linked i...
Ramnath Balasubramanyan, William W. Cohen
BMCBI
2008
138views more  BMCBI 2008»
15 years 2 months ago
SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803
Background: Cyanobacteria are model organisms for studying photosynthesis, carbon and nitrogen assimilation, evolution of plant plastids, and adaptability to environmental stresse...
Woo-Yeon Kim, Sungsoo Kang, Byoung-Chul Kim, Jeehy...