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» Prediction of protein structural class with Rough Sets
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RSFDGRC
2005
Springer
111views Data Mining» more  RSFDGRC 2005»
15 years 3 months ago
Feature Selection with Adjustable Criteria
Abstract. We present a study on a rough set based approach for feature selection. Instead of using significance or support, Parameterized Average Support Heuristic (PASH) consider...
Jingtao Yao, Ming Zhang
BMCBI
2006
101views more  BMCBI 2006»
14 years 9 months ago
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Petras J. Kundrotas, Emil Alexov
WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
15 years 2 months ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
BMCBI
2007
109views more  BMCBI 2007»
14 years 9 months ago
A domain-based approach to predict protein-protein interactions
Background: Knowing which proteins exist in a certain organism or cell type and how these proteins interact with each other are necessary for the understanding of biological proce...
Mudita Singhal, Haluk Resat
BMCBI
2010
175views more  BMCBI 2010»
14 years 9 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng