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» Prediction of protein structural class with Rough Sets
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TIT
2010
103views Education» more  TIT 2010»
14 years 4 months ago
Analysis of absorbing sets and fully absorbing sets of array-based LDPC codes
The class of low-density parity-check (LDPC) codes is attractive, since such codes can be decoded using practical message-passing algorithms, and their performance is known to app...
Lara Dolecek, Zhengya Zhang, Venkat Anantharam, Ma...
BMCBI
2006
180views more  BMCBI 2006»
14 years 9 months ago
Building multiclass classifiers for remote homology detection and fold recognition
Motivation Protein remote homology prediction and fold recognition are central problems in computational biology. Supervised learning algorithms based on support vector machines a...
Huzefa Rangwala, George Karypis
EVOW
2009
Springer
15 years 1 months ago
A Hierarchical Classification Ant Colony Algorithm for Predicting Gene Ontology Terms
Abstract. This paper proposes a novel Ant Colony Optimisation algorithm for the hierarchical problem of predicting protein functions using the Gene Ontology (GO). The GO structure ...
Fernando E. B. Otero, Alex Alves Freitas, Colin G....
BIBM
2007
IEEE
104views Bioinformatics» more  BIBM 2007»
15 years 1 months ago
A Protocol to Detect Local Affinities Involved in Proteins Distant Interactions
The tridimensional structure of a protein is constrained or stabilized by some local interactions between distant residues of the protein, such as disulfide bonds, electrostatic i...
Christophe Nicolas Magnan, Cécile Capponi, ...
BMCBI
2010
117views more  BMCBI 2010»
14 years 10 months ago
Properties and identification of antibiotic drug targets
Background: We analysed 48 non-redundant antibiotic target proteins from all bacteria, 22 antibiotic target proteins from E. coli only and 4243 non-drug targets from E. coli to id...
Tala Bakheet, Andrew J. Doig