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» Prediction of protein structural class with Rough Sets
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JIB
2007
172views more  JIB 2007»
14 years 9 months ago
The ABC (Analysing Biomolecular Contacts)-database
As protein-protein interactions are one of the basic mechanisms in most cellular processes, it is desirable to understand the molecular details of protein-protein contacts and ult...
Peter Walter, Sam Ansari, Volkhard Helms
BMCBI
2007
107views more  BMCBI 2007»
14 years 9 months ago
A computational approach for detecting peptidases and their specific inhibitors at the genome level
Background: Peptidases are proteolytic enzymes responsible for fundamental cellular activities in all organisms. Apparently about 2–5% of the genes encode for peptidases, irresp...
Lisa Bartoli, Remo Calabrese, Piero Fariselli, Dam...
NIPS
2007
14 years 11 months ago
New Outer Bounds on the Marginal Polytope
We give a new class of outer bounds on the marginal polytope, and propose a cutting-plane algorithm for efficiently optimizing over these constraints. When combined with a concav...
David Sontag, Tommi Jaakkola
124
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BMCBI
2005
126views more  BMCBI 2005»
14 years 9 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
BMCBI
2010
95views more  BMCBI 2010»
14 years 9 months ago
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results
Background: Accurate prediction of antigenic epitopes is important for immunologic research and medical applications, but it is still an open problem in bioinformatics. The case f...
Shide Liang, Dandan Zheng, Daron M. Standley, Bo Y...