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BMCBI
2006
133views more  BMCBI 2006»
14 years 9 months ago
Choosing negative examples for the prediction of protein-protein interactions
The protein-protein interaction networks of even well-studied model organisms are sketchy at best, highlighting the continued need for computational methods to help direct experim...
Asa Ben-Hur, William Stafford Noble
GECCO
2008
Springer
135views Optimization» more  GECCO 2008»
14 years 10 months ago
Context-dependent predictions and cognitive arm control with XCSF
While John Holland has always envisioned learning classifier systems (LCSs) as cognitive systems, most work on LCSs has focused on classification, datamining, and function appro...
Martin V. Butz, Oliver Herbort
BMCBI
2006
108views more  BMCBI 2006»
14 years 9 months ago
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
Background: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses t...
Huiquan Wang, Craig J. Benham
BMCBI
2005
115views more  BMCBI 2005»
14 years 9 months ago
Statistical distributions of optimal global alignment scores of random protein sequences
Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...
ATAL
2008
Springer
14 years 11 months ago
Dynamics based control with PSRs
We present an extension of the Dynamics Based Control (DBC) paradigm to environment models based on Predictive State Representations (PSRs). We show an approximate greedy version ...
Ariel Adam, Zinovi Rabinovich, Jeffrey S. Rosensch...