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BMCBI
2006
161views more  BMCBI 2006»
14 years 11 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
BMCBI
2007
216views more  BMCBI 2007»
14 years 11 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
CN
2007
111views more  CN 2007»
14 years 11 months ago
An auction mechanism for allocating the bandwidth of networks to their users
We present a mechanism for auctioning bandwidth on a network-wide basis to end users or ISPs that will utilize it for the same time period. This mechanism consists of a set of sim...
Manos Dramitinos, George D. Stamoulis, Costas Cour...
JCB
2008
159views more  JCB 2008»
14 years 11 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
KAIS
2006
126views more  KAIS 2006»
14 years 11 months ago
Fast and exact out-of-core and distributed k-means clustering
Clustering has been one of the most widely studied topics in data mining and k-means clustering has been one of the popular clustering algorithms. K-means requires several passes ...
Ruoming Jin, Anjan Goswami, Gagan Agrawal