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» Probabilistic Model Checking of Complex Biological Pathways
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NAR
2011
267views Computer Vision» more  NAR 2011»
14 years 6 months ago
EcoCyc: a comprehensive database of Escherichia coli biology
EcoCyc (http://EcoCyc.org) is a comprehensive model organism database for Escherichia coli K-12 MG1655. From the scientific literature, EcoCyc captures the functions of individual...
Ingrid M. Keseler, Julio Collado-Vides, Alberto Sa...
107
Voted
RECOMB
2005
Springer
16 years 20 days ago
The Factor Graph Network Model for Biological Systems
Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
116
Voted
ISBI
2009
IEEE
15 years 7 months ago
Instance-Based Generative Biological Shape Modeling
Biological shape modeling is an essential task that is required for systems biology efforts to simulate complex cell behaviors. Statistical learning methods have been used to buil...
Tao Peng, Wei Wang, Gustavo K. Rohde, Robert F. Mu...
95
Voted
RECOMB
2008
Springer
16 years 20 days ago
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics
The protein inference problem represents a major challenge in shotgun proteomics. Here we describe a novel Bayesian approach to address this challenge that incorporates the predict...
Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag R...
ACSD
2008
IEEE
106views Hardware» more  ACSD 2008»
15 years 2 months ago
Time-bounded model checking of infinite-state continuous-time Markov chains
The design of complex concurrent systems often involves intricate performance and dependability considerations. Continuous-time Markov chains (CTMCs) are widely used models for co...
Lijun Zhang, Holger Hermanns, Ernst Moritz Hahn, B...