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» Probabilistic Model Checking of Complex Biological Pathways
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103
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FOCI
2007
IEEE
15 years 6 months ago
Random Hypergraph Models of Learning and Memory in Biomolecular Networks: Shorter-Term Adaptability vs. Longer-Term Persistency
Recent progress in genomics and proteomics makes it possible to understand the biological networks at the systems level. We aim to develop computational models of learning and memo...
Byoung-Tak Zhang
97
Voted
RECOMB
2009
Springer
16 years 29 days ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
CSCLP
2008
Springer
15 years 2 months ago
Challenges in Constraint-Based Analysis of Hybrid Systems
In the analysis of hybrid discrete-continuous systems, rich arithmetic constraint formulae with complex Boolean structure arise naturally. The iSAT algorithm, a solver for such for...
Andreas Eggers, Natalia Kalinnik, Stefan Kupfersch...
BMCBI
2004
323views more  BMCBI 2004»
15 years 6 days ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
BMCBI
2010
160views more  BMCBI 2010»
15 years 14 days ago
Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
Background: Protein-protein interactions play a key role in biological processes of proteins within a cell. Recent high-throughput techniques have generated protein-protein intera...
Young-Rae Cho, Aidong Zhang