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» Probabilistic Model Checking of Complex Biological Pathways
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ECCB
2005
IEEE
15 years 6 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser
JELIA
2004
Springer
15 years 5 months ago
Towards a Logical Analysis of Biochemical Pathways
Biochemical pathways or networks are generic representations used to model many different types of complex functional and physical interactions in biological systems. Models based ...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...
89
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TACAS
2007
Springer
110views Algorithms» more  TACAS 2007»
15 years 6 months ago
Counterexamples in Probabilistic Model Checking
This paper considers algorithms and complexity results for the generation of counterexamples in model checking of probabilistic until-formulae in discrete-time Markov chains (DTMCs...
Tingting Han, Joost-Pieter Katoen
QEST
2009
IEEE
15 years 7 months ago
Language-Level Symmetry Reduction for Probabilistic Model Checking
—Symmetry reduction is a technique for combating state-space explosion in model checking. The generic representatives approach to symmetry reduction uses a language-level transla...
Alastair F. Donaldson, Alice Miller, David Parker
JCB
2006
185views more  JCB 2006»
15 years 9 days ago
A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...