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163
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RECOMB
2006
Springer
16 years 3 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
148
Voted
RECOMB
2006
Springer
16 years 3 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
132
Voted
CADE
2005
Springer
16 years 3 months ago
Privacy-Sensitive Information Flow with JML
In today's society, people have very little control over what kinds of personal data are collected and stored by various agencies in both the private and public sectors. We de...
Guillaume Dufay, Amy P. Felty, Stan Matwin
130
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STOC
2007
ACM
136views Algorithms» more  STOC 2007»
16 years 3 months ago
Exponential separations for one-way quantum communication complexity, with applications to cryptography
We give an exponential separation between one-way quantum and classical communication protocols for two partial Boolean functions, both of which are variants of the Boolean Hidden...
Dmitry Gavinsky, Julia Kempe, Iordanis Kerenidis, ...
135
Voted
STOC
2003
ACM
174views Algorithms» more  STOC 2003»
16 years 3 months ago
Adiabatic quantum state generation and statistical zero knowledge
The design of new quantum algorithms has proven to be an extremely difficult task. This paper considers a different approach to the problem, by studying the problem of 'quant...
Dorit Aharonov, Amnon Ta-Shma
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