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WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
15 years 11 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
BMCBI
2007
109views more  BMCBI 2007»
15 years 4 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....
WWW
2005
ACM
16 years 5 months ago
Scaling link-based similarity search
To exploit the similarity information hidden in the hyperlink structure of the web, this paper introduces algorithms scalable to graphs with billions of vertices on a distributed ...
Balázs Rácz, Dániel Fogaras
COCO
2007
Springer
75views Algorithms» more  COCO 2007»
15 years 11 months ago
On the Theory of Matchgate Computations
Valiant has proposed a new theory of algorithmic computation based on perfect matchings and Pfaffians. We study the properties of matchgates—the basic building blocks in this n...
Jin-yi Cai, Vinay Choudhary, Pinyan Lu
ICDE
2010
IEEE
219views Database» more  ICDE 2010»
16 years 4 months ago
PIP: A Database System for Great and Small Expectations
Estimation via sampling out of highly selective join queries is well known to be problematic, most notably in online aggregation. Without goal-directed sampling strategies, samples...
Oliver Kennedy, Christoph Koch