Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
To exploit the similarity information hidden in the hyperlink structure of the web, this paper introduces algorithms scalable to graphs with billions of vertices on a distributed ...
Valiant has proposed a new theory of algorithmic computation based on perfect matchings and Pfaffians. We study the properties of matchgates—the basic building blocks in this n...
Estimation via sampling out of highly selective join queries is well known to be problematic, most notably in online aggregation. Without goal-directed sampling strategies, samples...