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    » Probabilistic structural alignment of RNA sequences
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    BIOINFORMATICS
    2006
    73views more  BIOINFORMATICS 2006»
    SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments
    14 years 9 months ago
    SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments
    Download  www.kyb.mpg.de
    Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai
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    BIOINFORMATICS
    2007
    33views more  BIOINFORMATICS 2007»
    Murlet: a practical multiple alignment tool for structural RNA sequences
    14 years 9 months ago
    Murlet: a practical multiple alignment tool for structural RNA sequences
    Download  www.jsbi.org
    Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi ...
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    BMCBI
    2008
    62views more  BMCBI 2008»
    A fast structural multiple alignment method for long RNA sequences
    14 years 9 months ago
    A fast structural multiple alignment method for long RNA sequences
    Download  repository.dl.itc.u-tokyo.ac.jp
    Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi ...
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    RECOMB
    2006
    Springer
    134views Computational Biology» more  RECOMB 2006»
    Structural Alignment of Pseudoknotted RNA
    15 years 10 months ago
    Structural Alignment of Pseudoknotted RNA
    Download  cseweb.ucsd.edu
    In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
    Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
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    ICASSP
    2011
    IEEE
    151views Signal Processing» more  ICASSP 2011»
    Iterative estimation of structures of multiple RNA homologs: Turbofold
    14 years 1 months ago
    Iterative estimation of structures of multiple RNA homologs: Turbofold
    Download  mirlab.org
    TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
    Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathe...
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