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» Probabilistic topic modeling for genomic data interpretation
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NAACL
2010
14 years 7 months ago
Automatic Evaluation of Topic Coherence
This paper introduces the novel task of topic coherence evaluation, whereby a set of words, as generated by a topic model, is rated for coherence or interpretability. We apply a r...
David Newman, Jey Han Lau, Karl Grieser, Timothy B...
BMCBI
2004
150views more  BMCBI 2004»
14 years 9 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
KDD
2006
ACM
175views Data Mining» more  KDD 2006»
15 years 9 months ago
A mixture model for contextual text mining
Contextual text mining is concerned with extracting topical themes from a text collection with context information (e.g., time and location) and comparing/analyzing the variations...
Qiaozhu Mei, ChengXiang Zhai
BMCBI
2004
126views more  BMCBI 2004»
14 years 9 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
PVLDB
2010
135views more  PVLDB 2010»
14 years 7 months ago
Similarity Search and Mining in Uncertain Databases
Managing, searching and mining uncertain data has achieved much attention in the database community recently due to new sensor technologies and new ways of collecting data. There ...
Matthias Renz, Reynold Cheng, Hans-Peter Kriegel, ...